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J Clin Microbiol. 1988 November; 26(11): 2465-2466
Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity.
P R Hunter and
M A Gaston
Division of Hospital Infection, Central Public Health Laboratory, London, England.
ABSTRACT
An index of discrimination for typing methods is described, based on the probability of two unrelated strains being characterized as the same type. This index may be used to compare typing methods and select the most discriminatory system.
J Clin Microbiol. 1988 November; 26(11): 2465-2466
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Hjorth, S. V., Bjornelius, E., Lidbrink, P., Falk, L., Dohn, B., Berthelsen, L., Ma, L., Martin, D. H., Jensen, J. S.
(2006). Sequence-Based Typing of Mycoplasma genitalium Reveals Sexual Transmission.. J. Clin. Microbiol.
44: 2078-2083
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Torrea, G., Chenal-Francisque, V., Leclercq, A., Carniel, E.
(2006). Efficient Tracing of Global Isolates of Yersinia pestis by Restriction Fragment Length Polymorphism Analysis Using Three Insertion Sequences as Probes.. J. Clin. Microbiol.
44: 2084-2092
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Ruiz-Garbajosa, P., Bonten, M. J. M., Robinson, D. A., Top, J., Nallapareddy, S. R., Torres, C., Coque, T. M., Canton, R., Baquero, F., Murray, B. E., del Campo, R., Willems, R. J. L.
(2006). Multilocus Sequence Typing Scheme for Enterococcus faecalis Reveals Hospital-Adapted Genetic Complexes in a Background of High Rates of Recombination.. J. Clin. Microbiol.
44: 2220-2228
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Leclair, D., Pagotto, F., Farber, J. M., Cadieux, B., Austin, J. W.
(2006). Comparison of DNA fingerprinting methods for use in investigation of type e botulism outbreaks in the canadian arctic.. J. Clin. Microbiol.
44: 1635-1644
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Aracil, B., Slack, M., Perez-Vazquez, M., Roman, F., Ramsay, M., Campos, J.
(2006). Molecular Epidemiology of Haemophilus influenzae Type b Causing Vaccine Failures in the United Kingdom.. J. Clin. Microbiol.
44: 1645-1649
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Schouls, L. M., van der Ende, A., Damen, M., van de Pol, I.
(2006). Multiple-Locus Variable-Number Tandem Repeat Analysis of Neisseria meningitidis Yields Groupings Similar to Those Obtained by Multilocus Sequence Typing. J. Clin. Microbiol.
44: 1509-1518
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Siragusa, G. R., Danyluk, M. D., Hiett, K. L., Wise, M. G., Craven, S. E.
(2006). Molecular Subtyping of Poultry-Associated Type A Clostridium perfringens Isolates by Repetitive-Element PCR.. J. Clin. Microbiol.
44: 1065-1073
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Filliol, I., Motiwala, A. S., Cavatore, M., Qi, W., Hazbon, M. H., Bobadilla del Valle, M., Fyfe, J., Garcia-Garcia, L., Rastogi, N., Sola, C., Zozio, T., Guerrero, M. I., Leon, C. I., Crabtree, J., Angiuoli, S., Eisenach, K. D., Durmaz, R., Joloba, M. L., Rendon, A., Sifuentes-Osornio, J., Ponce de Leon, A., Cave, M. D., Fleischmann, R., Whittam, T. S., Alland, D.
(2006). Global Phylogeny of Mycobacterium tuberculosis Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA Fingerprinting Systems, and Recommendations for a Minimal Standard SNP Set. J. Bacteriol.
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Voskressenskaya, E., Leclercq, A., Tseneva, G., Carniel, E.
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Borucki, M. K., Gay, C. C., Reynolds, J., McElwain, K. L., Kim, S. H., Call, D. R., Knowles, D. P.
(2005). Genetic Diversity of Listeria monocytogenes Strains from a High-Prevalence Dairy Farm. Appl. Environ. Microbiol.
71: 5893-5899
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Prodinger, W. M., Brandstatter, A., Naumann, L., Pacciarini, M., Kubica, T., Boschiroli, M. L., Aranaz, A., Nagy, G., Cvetnic, Z., Ocepek, M., Skrypnyk, A., Erler, W., Niemann, S., Pavlik, I., Moser, I.
(2005). Characterization of Mycobacterium caprae Isolates from Europe by Mycobacterial Interspersed Repetitive Unit Genotyping. J. Clin. Microbiol.
43: 4984-4992
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Callaway, T. R., Keen, J. E., Edrington, T. S., Baumgard, L. H., Spicer, L., Fonda, E. S., Griswold, K. E., Overton, T. R., VanAmburgh, M. E., Anderson, R. C., Genovese, K. J., Poole, T. L., Harvey, R. B., Nisbet, D. J.
(2005). Fecal Prevalence and Diversity of Salmonella Species in Lactating Dairy Cattle in Four States. J DAIRY SCI
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Mokrousov, I., Ly, H. M., Otten, T., Lan, N. N., Vyshnevskyi, B., Hoffner, S., Narvskaya, O.
(2005). Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: Clues from human phylogeography. Genome Res
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Kuhn, I., Iversen, A., Finn, M., Greko, C., Burman, L. G., Blanch, A. R., Vilanova, X., Manero, A., Taylor, H., Caplin, J., Dominguez, L., Herrero, I. A., Moreno, M. A., Mollby, R.
(2005). Occurrence and Relatedness of Vancomycin-Resistant Enterococci in Animals, Humans, and the Environment in Different European Regions. Appl. Environ. Microbiol.
71: 5383-5390
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Duarte, R. S., Barros, R. R., Facklam, R. R., Teixeira, L. M.
(2005). Phenotypic and Genotypic Characteristics of Streptococcus porcinus Isolated from Human Sources. J. Clin. Microbiol.
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Smith, E. M., Green, L. E., Medley, G. F., Bird, H. E., Dowson, C. G.
(2005). Multilocus Sequence Typing of Staphylococcus aureus Isolated from High-Somatic-Cell-Count Cows and the Environment of an Organic Dairy Farm in the United Kingdom. J. Clin. Microbiol.
43: 4731-4736
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Smith, E. M., Green, L. E., Medley, G. F., Bird, H. E., Fox, L. K., Schukken, Y. H., Kruze, J. V., Bradley, A. J., Zadoks, R. N., Dowson, C. G.
(2005). Multilocus Sequence Typing of Intercontinental Bovine Staphylococcus aureus Isolates. J. Clin. Microbiol.
43: 4737-4743
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Mouwen, D. J. M., Weijtens, M. J. B. M., Capita, R., Alonso-Calleja, C., Prieto, M.
(2005). Discrimination of Enterobacterial Repetitive Intergenic Consensus PCR Types of Campylobacter coli and Campylobacter jejuni by Fourier Transform Infrared Spectroscopy. Appl. Environ. Microbiol.
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Sampaio, P., Gusmao, L., Correia, A., Alves, C., Rodrigues, A. G., Pina-Vaz, C., Amorim, A., Pais, C.
(2005). New Microsatellite Multiplex PCR for Candida albicans Strain Typing Reveals Microevolutionary Changes. J. Clin. Microbiol.
43: 3869-3876
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Koreen, L., Ramaswamy, S. V., Naidich, S., Koreen, I. V., Graff, G. R., Graviss, E. A., Kreiswirth, B. N.
(2005). Comparative Sequencing of the Serine-Aspartate Repeat-Encoding Region of the Clumping Factor B Gene (clfB) for Resolution within Clonal Groups of Staphylococcus aureus. J. Clin. Microbiol.
43: 3985-3994
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de Valk, H. A., Meis, J. F. G. M., Curfs, I. M., Muehlethaler, K., Mouton, J. W., Klaassen, C. H. W.
(2005). Use of a Novel Panel of Nine Short Tandem Repeats for Exact and High-Resolution Fingerprinting of Aspergillus fumigatus Isolates. J. Clin. Microbiol.
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Francois, P., Huyghe, A., Charbonnier, Y., Bento, M., Herzig, S., Topolski, I., Fleury, B., Lew, D., Vaudaux, P., Harbarth, S., van Leeuwen, W., van Belkum, A., Blanc, D. S., Pittet, D., Schrenzel, J.
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Schouls, L. M., van der Ende, A., van de Pol, I., Schot, C., Spanjaard, L., Vauterin, P., Wilderbeek, D., Witteveen, S.
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